Posts
R package for pairwise gene comparision
This little package will help you to do perform a pairwise alignment of open reading frames of the two genomes. Generally, we use full genomes for pairwise comparison. Sometimes, it is interesting to look at the gene level to figure out where within the genome the variation is largest.
Working with the genome of non-model organism in R Bioconductor
GenomicFeatures and BSgenome are two widely used packages for genomic data analysis in R Bioconductor. They have variety of functions to work with genome features. Unfortunately, there are only a limited species you can work with BSgenome.
Package to design primers for RACE PCR
Description You can use this package to design 3' and 5’primers for Race PCR. The design is based on the method described by Clonetech Race PCR manual. The resulting primers will have vector sequence automatically added to them.
Download CSV into R Studio from Github
You can use “readr” package to download CSV file and R data file from the github.
Steps
Go to the github repository link where you have the CSV file
Shiny App for Designing Primers for DNA Cloning
Cloning is one of the most widely used tool in molecular biology. Cloning primers typically contain target sequence and restriction site as overhang. Designing these primers manually can be time consuming and chances of errors are high.
Virus Growth Curve Generator App
I designed this Shiny app to generate growth curves. This app is based on ggplot and dplyr functions.You can try by downloading sample data here.Codes are available on my Github.
